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生物信息学/系统生物学研究小组:

陈铭

浙江大学,教授
生命科学学院
生物信息学系
紫金港校区, 杭州市余杭塘路866号
杭州 310058,中华人民共和国

电话/传真: +86-(0)571-88206612
电子信箱: mchen(at)zju.edu.cn





<English Version><中文简历>

个人经历:

2012.12-2013.12: 中组部、团中央第13批博士服务团挂职内蒙古民族大学,校长助理

2012.7; 2014.5: 德国比勒费尔德大学,客座教授课程(国际讲师项目)

2008.5-2009.6: 借调科技部基础司工作

2007.8-2007.9: 德国Bielefeld大学、IPK研究所,DAAD高访学者

2006.7-2006.8: 德国IPK研究所、Bielefeld大学,DAAD高访学者

2006-: 浙江大学生命科学学院,生物信息学系,系副主任(主持工作(-2010))

2005-: 浙江大学生命科学学院,植物研究所,院长助理(-2014.02)

2004-2005: 德国Bielefeld大学生物信息学博士后工作

2001-2004: 德国Bielefeld大学生物信息学博士研究生院,获生物信息学博士学位

2000-2001: 获德国Sachsen-Anhalt州科学和艺术部政府奖学金,自费留学Magdeburg大学计算机学院,攻读生物信息学博士学位,后转入德国Bielefeld大学生物信息学博士研究生院

1998-1999: 硕士毕业留校任教于浙江工业大学生物与环境工程学院

1995-1998: 浙江工业大学,生物化学工程专业,硕士研究生

1991-1995: 浙江工业大学,生物化学工程专业本科,后免试直升进入硕士研究生阶段

研究兴趣:

- 植物转录组表达与调控分析

- 生物高通量数据挖掘分析

- 系统生物学及生物大网络建模分析

- 作物抗逆资源生物信息学技术开发与应用

- 生物医学信息学、合成生物学

期刊编辑:

- 编委: Journal of Integrative Bioinformatics (JIB), ISSN: 1613-4516

- 编委: Genomics, Proteomics & Bioinformatics (GPB), ISSN: 1672-0229

- 编委: Current Bioinformatics (CB), ISSN: 1574-8936 (SCI IF=2.017)

- 编委: Advances in Bioinformatics (ABI), ISSN: 1687-8027

- 编委: OA Bioinformatics

- 编委: Journal of Proteomics and Computational Biology (JPCB)

- 编委: Journal of Bioinformatics and Comparative Genomics (JBCG)

- 编委: TheScientificWorldJOURNAL, ISSN: 1537-744X (SCI IF=1.73)

- 编委: Network Biology (NB), ISSN: 2220-8879

- 编委: Plant Omics Journal (POJ), ISSN: 1836-0661 (SCI IF=0.347)

- 编委: Frontiers in Technical Advances in Plant Science

- 编委: Frontiers in Plant Science

- 编委:生物信息学(China Journal of Bioinformatics), ISSN: 1672-5565

- 编委:浙江大学学报(农业与生命科学学版)(Journal of Zhejiang University (Agriculture & Life Sciences)), ISSN: 1008-9209

论文审稿:

- Bioinformatics, BMC Bioinformatics, BMC Systems Biology,  Briefings in Bioinformatics, Nucleic Acids Research, PLoS One, Gene, Journal of Biotechnology,BioSystems, IET Systems Biology,ISB (In Silico Biology), PSB (Pacific Symposium on Biocomputing), Journal of Bioinformatics and Sequence Analysis, Multimedia Cyberscape Journal, IEEE/ACM Transactions on Computational Biology and Bioinformatics, Journal of Theoretical Biology; Journal of Biomolecular Structure & Dynamics

- Plant Physiology, Annals of Botany, Planta, Plant Methods, Plant Science, Journal of Plant Physiology, Plant Omics Journal, Australian Journal of Crop Science, Frontiers in Plant Systems Biology

- Theoretical Biology and Medical Modelling, Experimental and Molecular Medicine, Journal of Chinese Clinical Medicine, Applied Microbiology and Biotechnology, Theory in Biosciences, Molecular Biology Reports, SCIENCE CHINA Life Sciences, 生物物理学学报,生物数学学报,中国细胞生物学学报...

(程序)委员、国际组织成员:

浙江省生物信息学学会首届理事长(2013)

中国运筹学会计算系统生物学分会理事、常务理事(2011、2015)

中国细胞生物学学会功能基因组信息学与系统生物学分会理事(2010)

中国医药生物技术协会生物医学信息技术分会委员会委员(2015)

中国系统仿真学会生命系统建模仿真专业委员会委员、副主任(2007、2011)

Member of the International Plant Proteomics Organization (INPPO)

ISCB Membership - International Society for Computational Biology (2011、2015)

IB 2017: The 13th International Symposium onIntegrative Bioinformatics, 丹麦Odense

GIW / BIOINFO 2017: International Joint Conference on Genome Informatics Workshop(GIW) and BIOINFO of KSBi (Korean Society for Bioinformatics) (GIW/BIOINFO 2017), 韩国Seoul

ISB 2017: The 11th International Conference on Systems Biology, 深圳

InCoB 2017: 16th International Conference on Bioinformatics, 深圳

ICBBAHE2017: International Conference on Bioinformatics and Biostatistics for Agriculture, Health and Environment, 孟加拉国Rajshahi

IB 2016: The 12th International Symposium onIntegrative Bioinformatics, 德国Bielefeld

ICCABS 2016: The 6th IEEE International Conference on Computational Advances in Bio and medical Sciences, 美国Atlanta

InCoB 2016: 15th International Conference on Bioinformatics, 新加坡Singapore

BioPPN 2016: The 7th International Workshop on Biological Processes and Petri Nets, 波兰Torun

ISB 2016: The 10th International Conference on Systems Biology, 威海

2016科学大数据前沿国际研讨会,包头

MCCMB 2015: The 7th International Moscow Conference on Computational Molecular Biology, 俄罗斯Moscow

ICCABS 2015: 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 美国Miami

NETTAB 2015 & IB 2015: The Joint 15th International Workshop on Network Tools and Applications for Biology and 11th Integrative Bioinformatics International Symposium, 意大利Bari

IB-PAS 2015: 2015 International German/Turkish/Russian Workshop on Integrative Biological Pathway Analysis and Simulation, 德国Bielefeld

SBB 2015: 7th International Young Scientists School "Systems Biology and Bioinformatics", 俄罗斯新西伯利亚科学城

ICTBI 2015: 第四届国际转化医学信息学会议,太仓

GIW/InCoB 2015: Odaiba, Tokyo

ISB 2015: The 9th International Conference on Systems Biology, 洛阳

BioPPN'2015 - International Workshop on Biological Processes & Petri Nets, 比利时Brussels

ISB/TBC 2014: The 8th International Conference on Systems Biology and the 4th Translational Bioinformatics Conference, 青岛

IB'2014: The 10th International Symposium on Integrative Bioinformatics, 英国Newcastle upon Tyne

InCoB 2014: The 13th International Conference on Bioinformatics, 澳大利亚Sydney

LSMS2014 & ICSEE2014: 2014 International Conference on Life System Modeling and Simulation & 2014 International Conference on Intelligent Computing for Sustainable Energy and Environment, 上海

IEEE ICCABS 2014: The 4th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 美国Miami

BIC-TA 2014: The 9th International Conference on Bio-inspired Computing: Theories and Applications, 武汉

APBC2014 (Network Workshop): The Twelfth Asia-Pacific Bioinformatics Conference, 上海

BioPPN'2014 - International Workshop on Biological Processes & Petri Nets, 突尼斯Tunis

IB'2013: The 9th International Symposium on Integrative Bioinformatics, 德国IPK-Gatersleben

BioPPN'2013 - International Workshop on Biological Processes & Petri Nets, 意大利Milano

Integrative Biology-2013: International Conference on? Integrative Biology Summit, 美国Las Vegas

CCSB 2013: 2013 Conference on Computational and Systems Biology, 三亚

SBB 2013: 5th International Young Scientists School "Systems Biology and Bioinformatics", 俄罗斯Novosibirsk Academgorodok

InCoB 2013: The 12th International Conference on Bioinformatics, 太仓

ICACS 2013: International Conference on Agriculture and Crops Science, 咸宁

ICTBI 2012: The 1st International Conference on Translational Biomedical Informatics, 苏州

BIC-TA 2012 - The seventh International Conference on “Bio-Inspired Computing: Theories and Application, 印度Gwalior

PMA'2012 - 2012 Fourth International Symposium on Plant Growth Modeling, 上海

BioPPN'2012 - International Workshop on Biological Processes & Petri Nets, 德国Hamburg

BGRS\SB-2012 - The 8th International Conference on the Bioinformatics of Genome Regulation and Structure\Systems Biology, 俄罗斯新西伯利亚科学城

CCBSB'2012 - 第五届全国生物信息学与系统生物学学术大会, 哈尔滨

IB'2011 - The 7th International Symposium on Integrative Bioinformatics, 荷兰Wageningen

BIC-TA'2011 - The Sixth International Conference on Bio-Inspired Computing: Theories and Applications, 马来西亚Penang

BioPPN'2011 - The 2nd Workshop on Biological Processes and Petri Nets, conjunction with Petri Net 2011 conference, 日本Kanazawa

GIW'2010 - The 21th International Conference on Genome Information, 杭州

CCBSB'2010 - 第四届全国生物信息学与系统生物学学术大会, 杭州

BIC-TA'2010 - The Fifth International Conference on Bio-Inspired Computing: Theories and Applications, 英国Liverpool

IBW2010 - The 8th International Bioinformatics Workshop, 武汉

IBW'2010 - The Sixth International Symposium on Integrative Bioinformatics, 英国Cambridge

LSMS'2010 - 2010 International Conference on Life System Modeling and Simulation, 无锡

BIC-TA'2009 - The Fourth International Conference on Bio-Inspired Computing: Theories and Applications, 北京

ICCSB'2009 - IEEE International Conference on Computational and System Biology, 上海

BGRS'2008 - The Sixth International Conference on Bioinformatics of Genome Regulation and Structure, 俄罗斯新西伯利亚市

IBW'2008 - The Fifth International Integrative Bioinformatics Workshop, 德国Wittenberg

BIC-TA'2008 - The Third International Conference on Bio-Inspired Computing: Theories and Applications, 澳大利亚Adelaide

IBW'2007 - The 4th International Integrative Bioinformatics Workshop, 比利时Ghent

LSMS'2007 - 2007 International conference on Life System Modeling and Simulation, 上海

ICBBE'2007 - The 1st International Conference on Bioinformatics and Biomedical Engineering, 武汉

BIC-TA'2007 - The Second International Conference on Bio-Inspired Computing: Theories and Applications, 郑州

项目评审、咨询专家:

国家自然科学基金,2011-

国家留学基金委项目,2012-

教育部留学回国人员科研启动基金,2009-

863项目, 2006-

973前期专项,2011-

美国NSF基金,2012-

新西兰国家健康研究理事会(HRC)项目, 2009-

中国博士后科学基金,2012-

各省厅、市局项目(如江苏省、湖南省、内蒙古、北京市、杭州市等),2009-

Judge, iGEM 2011-, Asia & World

近期发表:

- 书籍或章节

9. Ming Chen, Ralf Hofest?dt (2014)
Approaches in Integrative Bioinformatics - Towards the Virtual Cell
Springer, ISBN: 978-3-642-41280-6

8. 陈铭,包家立,黄炳顶 译 (2013)
《生物信息学》(第二版)
科学出版社, ISBN: 7-03-038812-4/Q 3212

7. 陈铭 主编 (2012)
《生物信息学》
科学出版社, ISBN: 978-7-03-033205-9

6. Yijun Meng, Ping Wu, Ming Chen(2011)
MicroRNAs in plant roots: current understanding and future perspectives
Non Coding RNAs in Plants (Erdmann, Volker A.; Barciszewski, Jan (Eds.)), ISBN 978-3-642-19453-5.

5. Ming Chen et al. (2011)
Published articles selected
Biological Petri Nets (Edgar Wingender ed.) ISBN 978-1-60750-703-1

4. 陈铭,王祎萍,罗聪(2008)
《生物信息学词汇双解通》
浙江大学出版社,2008年9月出版.ISBN(书号):978-7-308-05924-4.

3. 陈晓辉,宁开达,陈铭*(2006)
基于大规模DNA 微阵列数据的调控亚网络的重建
生物信息学中的智能计算理论与研究方法(黄德双等主编),pp. 65-69.

2. Ming Chen, Ralf Hofestaedt (2006)
Prediction and Alignment of Metabolic Pathways
Bioinformatics of Genome Regulation and Structure (Nikolay Kolchanov ed.), pp. 355-365.

1. Ming Chen, Ralf Hofestaedt (2005)
Bioinformatics Approaches for Metabolic Pathways
Handbook of Genome Research (Christoph W. Sensen ed.), pp.461-490.

- 专业论文(列20篇,其他请参考所有文章

20. Xianwen Meng, Qi Chen, Peijing Zhang, Ming Chen* (2017)
CircPro: an integrated tool for the identification of circRNAs with protein-coding potential
Bioinformatics, DOI: 10.1093/bioinformatics/btx446.

19. Chunhui Yuan, Xianwen Meng, Xue Li, Nicola Illing, Robert Ingle, Jingjing Wang, Ming Chen* (2017)
PceRBase: A database of plant competing endogenous RNA
Nucleic Acids Research, 45 (D1): D1009-D1014.

18. Lili Liu, Zijun Zhang, Taotao Sheng, Ming Chen* (2017)
DEF: An automated dead-end filling approach based on quasi-endosymbiosis
Bioinformatics, 33(3): 405-413.

17. Xianwen Meng, Xue Li, Peijing Zhang, Jingjing Wang, Yincong Zhou, Ming Chen* (2016)
Circular RNA: an emerging key player in RNA world
Briefings in Bioinformatics, DOI: 10.1093/bib/bbw045.

16. Xiaozhuan Dai, Youhuang Bai, Andrew Harrison, Ming Chen* (2016)
Towards a next-generation atlas of RNA secondary structure
Briefings in Bioinformatics, 17(1): 63-77.

15. Zhao Zhang, Li Jiang, Jingjing Wang, Peizhen Gu, Ming Chen* (2015)
MTide: an integrated tool for the identification of miRNA-target interaction in plants
Bioinformatics, 31(2): 290-291.

14. Dijun Chen, Liang-Yu Fu, Zhao Zhang, Guoliang Li, Hang Zhang, Li Jiang, Andrew Harrison, Hugh Shanahan, Christian Klukas,; Hong-Yu Zhang, Yijun Ruan, Ling-ling Chen, Ming Chen* (2014)
Dissecting the chromatin interactome of microRNA genes
Nucleic Acids Research, 42(5): 3028-3043.

13. Chaogang Shao, Ming Chen*, Yijun Meng* (2013)
A reverse framework for the identification of microRNA—target pairs in plants
Briefings in Bioinformatics, 14(3): 293-301.

12. Dijun Chen, Chun-hui Yuan, Jian Zhang, Zhao Zhang, Lin Bai, Yijun Meng, Ling-ling Chen, Ming Chen* (2012)
PlantNATsDB: a comprehensive database of plant natural antisense transcripts
Nucleic Acids Research, 40(1): D1187-D1193.

11. Donglin Huang, Yiling Huang, Youhuang Bai, Dijun Chen, Ralf Hofestaedt, Christian Klukas, Ming Chen* (2011)
MyBioNet: interactively visualize, edit and merge biological networks on the Web
Bioinformatics, 27(23): 3321-3322.

10. Yijun Meng, Chaogang Shao, Lingfeng Gou, Yongfeng Jin, Ming Chen* (2011)
Construction of MicroRNA- and MicroRNA*-mediated Regulatory Networks in Plants
RNA Biology, 8(6): 1124-1148.

9. Yijun Meng; Chaogang Shao; Ming Chen* (2011)
Toward microRNA-mediated gene regulatory networks in plants
Briefings in Bioinformatics, 12(6): 645-659.

8. Dijun Chen, Yijun Meng, Chunhui Yuan, Lin Bai, Donglin Huang, Shaolei Lv, Ping Wu, Lingling Chen, Ming Chen* (2011)
Plant siRNAs from introns mediate DNA methylation of host genes
RNA, 17: 1012-1024.

7. Yijun Meng, Lingfeng Gou, Dijun Chen, Chuanzao Mao, Yongfeng Jin, Ping Wu, Ming Chen* (2011)
PmiRKB: a plant microRNA knowledge base
Nucleic Acids Research, 39(1): D181-D187.

6. Dijun Chen, Yijun Meng, Xiaoxia Ma, Chuanzao Mao, Youhuang Bai, Junjie Cao, Haibin Gu, Ping Wu, Ming Chen* (2010)
Small RNAs in angiosperms: sequence characteristics, distribution, and generation
Bioinformatics, 26(11): 1391-1394

5. Ming Chen, Yijun Meng, Chuanzao Mao, Dijun Chen, Ping Wu (2010)
Methodological framework for functional characterization of plant microRNAs
Journal of Experimental Botany, 61(9): 2271-2280.

4. Xiaohui Chen, Ming Chen*, Kaida Ning (2006)
BNArray: An R package for constructing gene regulatory networks from microarray data by using Bayesian network
Bioinformatics, 22: 2952-2954.

3. Ming Chen, Ralf Hofestaedt (2006)
A Medical Bioinformatics Approach for Metabolic Disorders: Biomedical Data Prediction, Modeling and Systematic Analysis
Journal of Biomedical Informatics, 39(2): 147-159.

2. Ming Chen, Susana Lin and Ralf Hofestaedt (2004)
STCDB: Signal ransduction Classification Database
Nucleic Acids Research, 32(1), D456-D458.

1. Ming Chen and Ralf Hofestaedt (2003)
Quantitative Petri net model of gene regulated metabolic networks in the cell.
In Silico Biology, 3(3), 347-365.

- 讲演/海报/会议摘要

---2017---

148. Ming Chen (2017) Big omics data and bioinformatics for health science, Mini-Symposium on Big Data and Medical Informatics, June 30, Bitola, Macedonia.
147. Ming Chen (2017) Integrative bioinformatics approaches for cellular interactome modelling of rice. The 4th International Scientific Conference "Plant Genetics, Genomics, Bioinformatics and Biotechnology", May 30, Almaty, Kazakhstan.
146. Ming Chen (2017) The role of epigenetic factors in long-range interactions and stress response. The 7th International Conference on Nucleic Acid-Protein Chemical and Structural Biology, May. 26, 四川大学, 成都
145. 陈铭(2017) 水稻多层次网络的构建与可视化. 第四届全国计算生物学与生物信息学学术会议, 2017年4月23日, 湖南大学, 长沙
144. 陈铭(2017) 植物非编码RNA的生物信息学发掘与分析. 2017年4月21日,湖南农业大学, 长沙
143. 陈铭(2017) 大数据时代的生物信息学. 2017年4月11日,赤峰学院,赤峰
142. 陈铭(2017) 植物非编码RNA的生物信息学发掘与分析. 2017年3月24日,国家烟草基因研究中心,郑州
141. 陈铭(2017) 生物信息学进展及其应用. 2017年3月23日,浙江中医药大学,杭州
140. Ming Chen (2017) Integrative bioinformatics approaches towards whole plant cell modeling. International Conference on Bioinformatics and Biostatistics for Agriculture, Health and Environment, Jan. 22, Rajshahi, Bangladesh.
139. 陈铭(2017) 非编码转录组学的生物信息学研究. 2017年1月6日,宁波大学,宁波

---2016---

138. 陈铭(2016) Subcellular Localization Prediction of Rice Proteome and Virtual Cell Modeling.第六届全国植物蛋白质研究大会, 2016年12月19日,海南大学,海口
137. Ming Chen(2016) Approaches for whole cell modelling of rice. Sep. 29, Potsdam University, Germany
136. Ming Chen(2016) DaTo: the atlas of biolgoical databases and tools.The 12th International Symposium on Integrative Bioinformatics, Sep. 22, Bielefeld, Germany
135. Hongjun Chen, Jitong Xue, Ming Chen (2016) A spatial model of plant interactome and long non-coding RNA.The 10th International Conference on the Bioinformatics of Genome Regulation and Structure\Systems Biology, (BGRS\SB'2016), Sep. 1, Novosibirsk, Russia
134. Jitong Xue, Ming Chen, Yincong Zhou, Wanmao Ni (2016) Web-based application for flow cytometry data analysis. The 10th International Conference on the Bioinformatics of Genome Regulation and Structure\Systems Biology, (BGRS'2016) MM&HPC-BBB-2016, Aug. 30, Novosibirsk, Russia
133. 陈铭 (2016) Integrative Bioinformatics: achieved and missing.第5届青年生物信息PI研讨会暨北京生命科学论坛第三十八次会议, 2016年8月13日,中科院北京基因组所,北京
132. Ming Chen (2016) Bioinformatics Insight behind the Beauty of Plants. Asian Beauty Research Symposium, Aug 10, AmorePacific, Shanghai, China
131. 陈铭 (2016) 基于多组学数据整合的水稻生物大网络. 科学大数据前沿国际研讨会,2016年7月8-10日,内蒙古科技大学,包头
130. Salwa E.S. Mohamed, Oxana B. Dobrovolskaya, Vladimir N. Babenko, Khaled Salem, Ming Chen, Yuriy L. Orlov (2016) Comparative analysis of plant genome structure and antisense transcripts. Belgrade Bioinformatics Conference (BELBI 2016), June 20-24, Belgrade, Serbia,
129. Ming Chen (2016) The role of cross-talk epigenetic patterns, long-range interactions and NATs in gene regulation. The 6th International Conference on Nucleic Acid-Protein Chemical and Structural Biology for Novel Drug Discovery, May 27, Sichuan University, Chengdu, China
128. 陈铭 (2016) 组学大数据的生物信息学分析,西湖论坛-干细胞与转化医学研讨会,2016年4月18日,杭州紫金港
127. 陈铭 (2016) Bioinformatics approaches for plant ncRNAs regulatory networks. 第三届全国计算生物学与生物信息学学术会议,2016年4月16日,南方医科大学,广州
126. Ming Chen (2016) From plant non-coding RNAs to virtual plant cell modeling, April 6, Frankfurt University, Germany.
125. Ming Chen (2016) Plant non-coding RNAs, protein subcellular localization and interactome, April 5, Goettingen University, Germany.
124. Ming Chen (2016) Bioinformatics approaches for plant high-throughput phenotyping.Workshop on "modelling tree growth and physiological proccesses at organ, branch and whole-tree scale" (ANR DFG project FSPM Apple), April 4, Goettingen, Germany.
123. 陈铭 (2016) MicroRNA多水平分子互作网络,精准医学与高性能计算学术研讨会,2016年3月26日,上海交通大学,上海
122. Ming Chen (2016) Plant non-coding RNAs, protein subcellular localization and interactome, Mini-Symposium on transcriptome studies in non-model plants, March 17, Cape Town, South Africa.

---2015---

121. Lu Zhu, Björn Sommer, Christoph Brinkolf, Ralf Hofestädt, Lili Liu, Xianwen Meng and Ming Chen (2015) Virtual Plant Cell Modeling and 3D Visualization, The Joint 15th International Workshop on Network Tools and Applications for Biology and 11th Integrative Bioinformatics International Symposium, Oct 14-16, Bari, Italy.
120. Ming Chen (2015) Genome-wide multilevel spatial interactome model of rice , Sino-German workshop "Multiscale Spatial Computational Systems Biology", Oct.10, Sino-German Science Center, Beijing, China
119. Ming Chen (2015) Computational Systems Biology in China, Sino-German workshop "Multiscale Spatial Computational Systems Biology", Oct.10, Sino-German Science Center, Beijing, China
118. Ming Chen (2015) Organelle-focused interactome of rice, The 9th International Conference on Systems Biology, August 23, Luoyang, China
117. Ming Chen (2015) Biomedical Informatics, from academic to industry, Beielefeld University, July 28, Bielefeld, Germany.
116. Ming Chen (2015) Big Data, Big Network: computational modecular biology of rice. The 7th International Moscow Conference on Computational Molecular Biology, July 16-19, Moscow, Russia.
115. Ming Chen (2015) Towards MicroRNA Interactome and Network Visualization. The Protein Network Workshop: “Networks in Biological Sciences”, June 8-12, National University of Singapore, Singapore.
114. 陈铭 (2015) 生物大数据与生物信息学分析,浙江工业大学,2015年6月17日,杭州
113. Ming Chen (2015) Organell-focused proteomes and interactomes in rice.China-South Africa Symposium on Plant Omics, June 4, Hangzhou, China.
112. 陈铭 (2015) 基于多组学高通量数据的植物转录调控网络分析,福建农林大学,2015年5月20日,福州
111. Ming Chen (2015) RiceNet: an integrative approach towards virtual cell modeling.Sino-German Symposium on Virtual Cell Modeling, April 4, Hangzhou, China.
110. 陈铭 (2015) From Omics, Systems Biology to Synthetic Biology, 浙江大学生物医学工程与仪器科学学院,2015年1月28日,杭州玉泉
109. 陈铭 (2015) From Omics Data and Non-coding RNA Systems Biology,浙江大学基础医学年会,2015年1月17日,杭州紫金港

---2014---

108. 陈铭 (2014) 基于高通量测序数据的植物非编码RNA的挖掘与分析,内蒙古大学,2014年12月2日,呼和浩特
107. 陈铭 (2014) 大数据时代的生物信息学研究与应用,内蒙古师范大学,2014年12月1日,呼和浩特
106. 陈铭 (2014) 整合生物信息学:从基因组学到表型组学 ,内蒙古农业大学,2014年12月1日,呼和浩特
105. 陈铭 (2014) 植物亚细胞分子水平生物网络的重构与分析,山东大学,2014年11月23日,济南
104. 陈铭 (2014) 水稻多层次生物网络的重构及分析,华中科技大学,2014年10月14日,武汉
103. 陈铭 (2014) RiceNet, an integrative approach for genome wide metabolic network reconstruction of rice, 第六届全国生物信息学与系统生物学学术大会,东南大学,2014年10月8日,南京
102. Jingjing Wang, Ming Chen (2014) The roles of cross-talking epigenetic patterns in Arabidopsis thaliana, 2014 International Workshop on Biological Big Bytes , Sep 20, Harbin, China.
101. 陈铭 (2014) 植物非编码RNA的生物信息学研究,哈尔滨医科大学,2014年8月19日,哈尔滨
100. 陈铭 (2014) 水稻大生物网络的构建,2014作物生物信息学研讨会,南京农业大学,2014年8月16日,南京
99. 陈铭 (2014) 生物信息学应对生物大数据之挑战,温州医科大学,2014年7月31日,温州
98. Ming Chen (2014) Integrative Prediction of Plant Protein Subcellular Locations. 2014 International German/Russian Summer School on Integrative Biological Pathway Analysis and Simulation, June 2-4, Bielefeld, Germany.
97. Ming Chen (2014) Towards MicroRNA Interactome and Network Visualization. 3. International Workshop on “Translational Bioinformatics and Health Informatics”, May 21-23, Izmir, Turkey.
96. Ming Chen (2014) Construction of the Rice Genome-scale Multiple Level Regulatory Network.International Symposium on Integative Bioinformatics, May 13-15, Newcastle, UK.
95. Ming Chen (2014) 生物大数据时代的科学研究,湖州师范学院,2014年3月30日,湖州

---2013---

94. Lili Liu, Ming Chen (2013) Construction of the Rice Genome-scale Multiple Level Regulatory Network. 2013 International Workshop on Crops, Chips, and Computers, Sep 13, Tongliao, China.
93. Ming Chen (2013) RiceNet: Genome-scale multi-level network reconstruction of rice. International Conference on Integrative Biology Summit, August 5-7, Embassy Suites Las Vegas, USA.
92. Ming Chen (2013) Towards a comprehensive microRNA interactome network. 5th International Young Scientists School "Systems Biology and Bioinformatics", June 23-26, Novosibrisk, Russia.
91. Yue Wang, Ming Chen (2013) An evaluation of the software tools for plants microRNA deep-sequencing data analysis. 5th International Young Scientists School "Systems Biology and Bioinformatics", June 23-26, Novosibrisk, Russia.
90. Danfeng Jin, Yuhua Zhao, Ming Chen (2013) Differential expression analysis of microRNAs in the root of M.truncatula when symbiosis with S.meliloti and G.intraradices. 5th International Young Scientists School "Systems Biology and Bioinformatics", June 23-26, Novosibrisk, Russia.
89. Ming Chen (2013) 生物信息学进展与应用,内蒙古科技大学,2013年4月22日,包头
88. Lili Liu, Ming Chen (2012) An Integrative Bioinformatics Framework for Genome-scale Multiple Level Network Reconstruction of Rice, International Symposium on Integative Bioinformatics, March 24, The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany.
87. Ming Chen (2013) 生物信息学概况与专业建设,内蒙古民族大学,2013年3月23日,通辽

---2012---

86. Ming Chen (2012) Integrative Bioinformatics Approaches for Small RNAs and Natural Antisense Transcripts Studies in Plants, Mini-symposium, July 25, CeBiTec, Bielefeld University, Germany.
85. Ming Chen (2012) Integrative Bioinformatics Approaches for Small RNAs and Natural Antisense Transcripts Studies in Plants, Open Discussion Forum Bioinformatics, July 20, The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany.
84. Ming Chen (2012) Plant transcriptome and small RNAs analysis: bioinformatics approaches, BGRS\SB-2012, June 27, Novosibrisk, Russia..
83. Y. L. Orlov, D. Chen, O. Dobrovolskaya, Y. Meng, L. Chen, D.A. Afonnikov, M. Chen (2012) COMPUTER ANALYSIS AND DATABASE PRESENTATION OF ANTISENSE TRANSCRIPTION ASSOCIATED WITH MICRORNA TARGETS IN PLANT GENOMES, BGRS\SB-2012, June 25-29, Novosibrisk, Russia.
82.Y.L. Orlov, G. Li, D.A. Afonnikov, B. Lim, N. Clarke, M. Huss, K.V. Gunbin, Y. Ruan, N.L. Podkolodnyy, M. Chen, H.-H. Ng (2012) TRANSCRIPTION FACTOR BINDING AND CHROMATIN MODIFICATIONS ANALYSIS BY CHIP SEQUENCING DATA, BGRS\SB-2012, June 25-29, Novosibrisk, Russia.
81. 陈铭 (2012) 植物转录组学生物信息学分析, 新疆大学,2012年6月24日,乌鲁木齐

---2011---

80.陈铭(2011) ZJU-China @ iGEM,哈尔滨工业大学,2001年12月3日,哈尔滨
79.Ming Chen(2011) Toward Systems Understanding of Plant Small RNAs and NATs,东北农业大学,2001年12月3日,哈尔滨
78.陈铭(2011) 浙江大学生物信息学专业建设及人才培养,第六届"高校生命科学教学论坛", 2011年11月20日,南昌
77. Ming Chen (2011) Computational Analysis of Plant small RNAs and NATs, 亚热带农业生物资源保护与利用国家重点实验室,广西大学,2011年11月17日,南宁
76. Guy Baudoux, Ming Chen (2011) Prediction of the 3D structure of OsPHF1 and OsPT8, Annual Workshop on "Chips, Computers and Crops" (CCC'2011), Sep 22, Wuhan
75. Ming Chen (2011) Systems Biology and Plant Small RNA Network, 华中科技大学,2001年9月21日,武汉
74. Chao Feng, Kun-song Chen, Ming Chen (2011) Functional annotation of Chinese bayberry (Myrica rubra Sieb. and Zucc.) transcriptome during fruit ripening, Mini Symposium: "From Omics to Phenomics, and to Systems Biology, July 25, Hangzhou
73. Dijun Chen, Ming Chen (2011) The BIG world of small RNAs, Mini Symposium: "From Omics to Phenomics, and to Systems Biology, July 25, Hangzhou
72. 陈铭 (2011) 植物小分子RNA序列与功能的生物信息学研究,南京农业大学,2011年7月13日,南京
71. 陈铭 (2011) 系统生物学中的网络建模的研究进展,温州医学院,2011年6月24日,温州
70. 陈铭 (2011) 植物小分子RNA高通量数据分析及调控网络研究,郑州烟草研究院,2011年5月24日,郑州
69. 陈铭 (2011) 基于下一代测序数据分析植物小分子RNA及其调控,浙江农林大学,2011年5月17日,临安
68. Ming Chen (2011) The computational analysis of micro-RNA's using next generation sequencing data in plants, 23 March, Royal Holloway, University of London, London, UK.
67. Ming Chen (2011) Computational plant transcriptomics based on HTP data analysis, 21 March, Essex University, Colchester, UK
66. 陈铭 (2011) 我国作物生物信息学研究的思考与建议,华大基因研究院,2011年3月11日,深圳
65. 陈铭 (2011) 系统生物学建模分析,浙江大学加州纳米研究院,2011年3月3日,杭州

---2010---

64. Donglin Huang, Yiling Huang, Christian Klukas, Ralf Hofestaedt, Ming Chen* (2010) PBSK Browser: navigate biological pathways of PSI-MI, BioPAX, SBML and KGML formats, 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, Dec. 18-21, Hong Kong.
63. 陈铭 (2010) 系统生物学与合成生物学, 浙江工业大学,2010年11月26日,杭州
62. 陈铭 (2010) Several topics in current bioinformatics, 湖州师范学院,2010年10月16日,湖州
61. Yijun Meng, Ming Chen (2010) RNA editing of nuclear transcripts in Arabidopsis thaliana, International Conference of Bioinformatics (InCoB21010), Sep 26-28, Tokyo, Japan
60. Yijun Meng, Ming Chen (2010) Characterization of plant small RNAs based on high-throughput sequencing, Plant Genomics in China XI, Aug 19-21, Changchun, China
59. Ming Chen (2010) Computational Analysis of Plant Samll RNAs, The 8th International Bioinformatics Workshop (IBW2010), June 4-6, Wuhan, China
58. Yijun Meng, Ming Chen* (2010) Gain insights into plant transcriptomes by digging next-generation sequencing data,2010 International Workshop on Integrative Biological Pathway Analysis and Simulation (IB-PAS 2010), May 17-21, Bielefeld, Germany
57. 陈铭 (2010) 应用生物信息学,上海农业科学院,2010年2月2日,上海
56. Ming Chen (2010) A computational approach for identification of human disease phenotype-genotype association, Sino-German Workshop on "Computational systems biology approaches for cancer research and biomarker discovery", Jan. 11-15, Hangzhou, China

---2009---

55. 陈铭 (2009) 生物信息资源平台的建设及应用,浙江省高校生命科学学院(系)协作会议,2009年12月5日,宁波
54. 陈铭 (2009) 作物功能基因组分析平台及系统生物学研究, 华中农业大学, 2009年11月17日, 武汉
53. 陈铭 (2009) 系统生物学中的建模问题, 2009年生命系统建模仿真学术研讨会, 2009年11月4日, 北京大学
52. 陈铭 (2009) 系统医药信息学(Systems MedInformatics), 全国计算机化学会第十届学术年会、计算机辅助组学研究及其在药物研发与疾病诊断中的应用研讨会, 2009年10月23、24日, 杭州
51. Ming Chen (2009) Modeling and Simulation of Biological Networks, 2009 International Summer School on Chips, Computers and Crops, Zhejiang University, Sep. 21-28, Hangzhou
50. Ming Chen (2009) The Australia China Young Scientist Exchange Programme 2009 - Report, Aug 27, Australian National University, Australia.
49. Ming Chen (2009) Bioinformatics and Its Application, Bioinformatics Sydney. Aug 24, Sydney University, Australia.
48. Ming Chen (2009) Plant Bioinformatics, The Australian Centre for Plant Functional Genomics. Aug 20-21, Adelaide, Australia.
47. 陈铭,白有煌(2009)植物生物信息学及竹子基因组学分析,浙江林学院,2009年8月6日,临安
46. Donglin Huang, Ming Chen* (2009) Layout of Signaling Pathways, Sino-German Workshop Bioinformatics, July 9-10, Bielefeld, Germany

---2008---

45. 陈铭 (2008) 后基因组时代浙江省生物资源信息收集和应用, 浙江省高校生命科学学院(系)协作会议, 2008年12月6日, 舟山
44. Ming Chen (2008) Pathways prediction and analysis, Sino-German-Russian Workshop “Metabolic Network Analysis”, Bielefeld University, Aug. 25-26, Bielefeld, Germany
43. Junjie Cao, Ming Chen* (2008) A model of microarray pre-processing and it's application, Integrative Bioinformatics Workshop 2008, Aug. 20-22, Lecucorea Wittenberg, Germany
42. Xiang Chen, Ming Chen* (2008) VIRS: a web server for identifying restriction sites in multiple DNA sequences, Integrative Bioinformatics Workshop 2008, Aug. 20-22, Lecucorea Wittenberg, Germany
41. Cong Luo, Ming Chen* (2008) OsPAD: A Systemic Proteome Annotation Database for Oryza sativa 2D-PAGE, the Sixth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2008). June 22-28, Novosibirsk, Russia.

---2007---

40. Ming Chen (2007) DAAD Summer School 2007 - Methods from Mathematics and Computer Science, Oct. 12. PICB, Shanghai.
39. Ming Chen (2007) Rice Chip Annotation System and Gene Regulatory Sub-Network Inference, Waterman Seminar, Sep. 26th. Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany.
38. Wen Du, Yan Geng, Mingxi Chen, Zhaohui Zhang, Ming Chen* (2007) Bioinformatics Analysis of NMDAR 1, the 3rd International Conference of Molecular Simulations and Applied Informatics Technologies, April 19-22, Hangzhou, China, pp.108-117.
37. Chenyi Pan, Xiao Wang, Wenqi Zhu, Jian Wang, Zhaohui Zhang,Ming Chen* (2007) Bioinformatics Analysis of PSD-95 Structure and Its Interacting Partners, the 3rd International Conference of Molecular Simulations and Applied Informatics Technologies, April 19-22, Hangzhou, China, pp.118-129.
36. 陈铭 (2007) 生物信息学讲座, 2007年4月, 福建农林大学
35. Ming Chen (2007) Prediction and Simulation of Pathway, Shanghai workshop on Genome-Based Systems Biotechnology of Biotechnologically Relevant Prokaryotes, March 12-16, PICB, Shanghai, China.

---2006---

34. Ming Chen (2006) Approaches for Large Scale Biological Network Modeling and Simulation, Mini-Symposis on Current Problems in Systems Biology, Oct. 27, PICB, Shanghai, China.
33. Ming Chen, Fei He, Qingyun Shi, Ping Wu (2006) A novel and integrative approach for rice gene expression an annotation and functional analysis, Oct. 9-13, 2nd International Rice Congress, New Delhi, India.
32. Ming Chen (2006) Systems Analysis of Biopathways, July 14, Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany.
31. Fei He, Qingyun Shi, Chuan Shao, Ming Chen* (2006) Gene Expression Profiling and Protein Function Analysis of Oryza sative, EMBO course "Protein: Structure, Dynamics, Energnetics", May 10-17, PICB, Shanghai, China.
30. Wei Hong, Bin Zhu, Ming Chen* (2006) Integrated Bioinformatics Analysis of Proteomics Based on SWISS-PROT, EMBO course "Protein: Structure, Dynamics, Energnetics", May 10-17, PICB, Shanghai, China.
29. Ming Chen (2006) Approaches towards Systematic Analyses of Metabolic Disorders and Relevant Biological Networks. Mini-Symposium "From Epidemiology to Applied Systems Biology", April 18, CAS-MPG Partner Institute for Computational Biology, Shanghai, China.

---2005---

28. 陈铭 (2005) 植物生物信息学, 植物科学与浙江科技经济发展论坛, 2005年11月18-20日, 绍兴
27. Ming Chen (2005) From simple nucleotides ATCG to complex biological networks: what do mathematicians do? Oct. 26, Department of Mathematics, Zhejiang University.
26. Zheng Ye, Huan Xu, Qichao Tu, Shu Hong, Tiansheng Xie, Di Xia, Ming Chen* (2005) A Web-based Platform for Drug Metabolism Research, 2005 Hangzhou International Conference on Drug Metabolism, Oct. 18th-20th, Hangzhou, China.
25. Ming Chen (2005) Prediction and Alignment of Biopathways, 2005 Computational Biology - Challenges and Visions, Oct.13-16, CAS-MPG Partner Institute for Computational Biology, Shanghai.
24. Sridhar Hariharaputran, Ming Chen and Ralf Hofest?t (2005) Alignment and Classification of Signaling Pathways, German Conference on Bioinformatics, Oct. 5th-7th, Hamburg, Germany.
23. Ming Chen, Ralf Hofestädt (2005) Integrative Analysis of Metabolic Disorders by Means of Medical Bioinformatics, 27th Annual International Conference of the IEEE Engineering In Medicine and Biology Society (EMBS), 2005, Sep.1-4, Shanghai, China.
22. Ming Chen (2005) Systems Analysis of Biopathways, Sep.1, Shanghai Center for Bioinformation Technology, Shanghai.
21. 陈铭 (2005) 生物信息学与生物工程, 2005年7月, 浙江工业大学.
20. Ming Chen (2005) Towards Systems Analysis of Biopathways. China-UK Systems Biology Workshop, 2005, June 20-21, Hangzhou, China.
19. Ming Chen (2005) Structural Analysis of Generalized and Specific Biological Networks. Metabolic Pathway Analysis, MPA'05, 2005, March 3-4, Jena, Germany.

---2004---

18. 陈铭 (2004) 后基因组时代的生物信息学/生物代谢网络的建模与分析/生物代谢途径的重建与对准, 2004年9月, 内蒙古农业大学.
17. Ming Chen (2004) A Systems Analysis of Urea Cycle Disorders, 3rd BREW: Bioinformatics Research & Education Workshop, 2004, April 26-28, Helsinki, Finland.
16. 陈铭 (2004) 生物信息学进展, 2003年12月, 内蒙古农业大学/内蒙古大学/内蒙古师范大学.

---2003---

15. Ming Chen, Susana Lin and Ralf Hofestaedt (2003) Recommendations for Classification and Nomenclature of Signal Transduction. In: Signal Transduction: Receptors, Mediators and Genes - abstract proceedings of 7th Meeting of the Signal Transduction Society, 2003, Nov. 6-8, Weimar, Germany, Vol.3-4/2003: 134.
14. Susana Lin, Ming Chen and Ralf Hofestaedt (2003) Signaling Network triggerable by Trypanosoma cruzi through Calcium. In: Signal Transduction: Receptors, Mediators and Genes - abstract proceedings of 7th Meeting of the Signal Transduction Society, 2003, Nov. 6-8, Weimar, Germany, Vol.3-4/2003: 174.
13. Ming Chen (2003) Reconstruction of Metabolic Pathways via a Web-Based Biological Information Retrieval System. 2nd BREW: Bioinformatics Research & Education Workshop, 2003, April 28-40, ZIF-Uni, Bielefeld, Germany.
12. Ming Chen (2003) Systems Metabolic Network Modeling and Simulation with Petri Nets. 38th Winter Seminar "Biophysical Chemistry, Molecular Biology and Cybernetics of Cell Functions". January 15-29, 2003, Klosters, Switzerland

---2002---

11. Ming Chen (2002) Systems Biology Modeling and Simulating Metabolic Networks with Petri Nets. In Poster Abstracts' Book of the ICSB'02 - International Conference on Systems Biology, 2002, Dec. 13-15, Stockholm, Sweden, p85.
10. Ming Chen, Andreas Freier, Jacob Koehler, Alexander Rueegg (2002) The Biology Petri Net Markup Language. In: J?rg Desel, Mathias Weske (Hrsg.), Lecture Notes in Informatics - proceedings of Promise'2002, Oct. 9-11, Potsdam, Germany, Vol. 21: 150-161.
9. Ming Chen (2002) Matabolic Pathway Alignment and Alternative Pathways Indentification. In Poster Abstracts' Book of the ECCB'02 (in conjunction with the GCB'02) - European Conference on Computational Biology, 2002, Oct. 6-9, Saarbrücken, Germany, p22: 40-41.
8. Ming Chen (2002) Pairwise Metabolic Pathway Alignment. In abstract of the WABI'02 - 2nd Workshop on Algorithms in Bioinformatics, 2002, Sep. 16-21, Rome, Italy.
7. Ming Chen, Andreas Freier and Ralf Hofestaedt (2002) Graph Theory Based Metabolic Network Initial Analysis and Metabolic Pathway Alignment, the abstract proceeding of "ICM 2002, The 3rd International Conference on Mathematical Biology", 2002, Aug. 15-18, Guilin, China.
6. Ming Chen (2002) Modelling and Simulation of Metabolic Networks with Petri Nets Approach, 2002, June 25, DKFZ Heidelberg, Germany.
5. Ming Chen (2002) Modelling and Simulation of Metabolic Networks: Petri Nets Approach and Perspective, in the proceeding of "ESM 2002, 16th European Simulation Multiconference" , 2002, June 3-5, Darmstadt, Germany, pp: 441-444.
4. Ming Chen and Andreas Freier (2002) Petri Net Based Modelling and Simulation of Metabolic Networks in the Cell, 1st BREW: Bioinformatics Research & Education Workshop, 2002, April 17-19, EMBL-EBI, Cambridge, England.

---2001---

3. Ming Chen, Ralf Hofestaedt and Andreas Freier (2001) A Workable Approach for Modeling and Simulation of Biochemical Processes with a Hybrid Petri nets System, 1st International MTBio Workshop on Function and Regulation of Cellular Systems: Experiments and Models, 2001, June 24-30, Dresden, Germany, p20.

---2000---

2. Ming Chen (2000) Modelling the glycolysis metabolism using hybrid petri nets, DFG-Workshop im Rahmen des DFG-Schwerpunktes Informatikmethoden zur Analyse und genomischer Datenmengen 2000, Mai 19-20, Magdeburg, Germany.
1. Andreas Freier,Ming Chen und Ralf Hofestaedt (2000) MetabSim - Regelbasierte Simulation Metabolischer Prozesse. DFG-Workshop im Rahmen des DFG-Schwerpunktes Informatikmethoden zur Analyse und genomischer Datenmengen , 2000, Mai 19-20, Magdeburg, Germany.

- 博士论文

Ming Chen (2004) In Silico Systems Analysis of Biopathways, PhD Thesis (Dr. rer. nat), Faculty of Technology, Bielefeld University, Bielefeld, Germany.

 

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This page last modified: Oct 10, 2013