Zhejiang University

CIB 2009
2009 International Workshop on Computational and Integrative Biology
a satellite meeting of the International Conference of Integrative Biology
September 18th to 20th, 2009
Hangzhou, China

Bielefeld Informationsmanagement in der Biotechnologie e.V.

Preliminary Programme

Registration Place: Zi Jin Gang Hotel, Hangzhou, P.R.China
Conference Hall:  Conference Room, 6th floor, Zi Jin Gang Hotel, Hangzhou, P.R.China
Thursday, 17th September 2009
  • 14:00~20:00   Registration of Participants
Friday, 18th September 2009
  • 08:00~09:30  Registration of Participants
  • 09:30~09:45  Opening Ceremony (Chair: Ming Chen)
    Ming Chen (General Chair, Zhejiang University)
    Ralf Hofestädt (CIB Chair, Bielefeld University)
    Andrew Harrison (CCC Chair, University of Essex)
  • 09:45~10:00  Tea break
  • Morning Session (Chair: Andrew Harrison)

  • 10:00~10:45  Transcriptomic evidence for neutral evolution
  •              Neil Graham (University of Nottingham, UK)
  • 10:45~11:30  Can in silico evolution outperform natural evolution? Hidden opportunities to increase plant productivity
  •              Xinguang Zhu (CAS, China)
  • 11:30~11:45  Photograph
  • 12:00~13:30  Lunch
  • Afternoon Session (Chair: Hiroshi Matsuno)

  • 14:00~14:30  Models of SIGIRR inhibiting the toll-like receptor TLR4 signaling pathway
  •               Tiandi Wei (Ludwig-Maximilians-Universität M¨¹nchen,Germany)
  • 14:30~15:00  Integration of -omics data and networks for biomedical research
  •              Christian Klukas (Leibniz Institute of Plant Genetics and Crop Plant Research, Germany)
  • 15:00~15:30   Predicting the oncogenic pathway activities of individual samples from microarray gene expression profiles
  •              Gaofeng Huang (University of Oxford, UK)
  • 15:30~15:45  Tea break
  • 15:45~16:15  Reconstruction of biological networks based on life science data integration
  •               B. Kormeier (Bielefeld University, Germany)
  • 16:15~16:45  Simulation-based model checking approach for cell fate specification - using cell illustrator online: a computational platform for systems biology
  •              Chen Li (University of Tokyo, Japan)
  • 16:45~17:15  Towards identification of human disease phenotype-genotype association via a network-module based method
  •              Qiang Jiang (Shanghai Institutes for Biological Sciences, China)
  • 18:00~20:00  Dinner
Saturday, 19th September 2009

    Morning Session (Chair: Matthias Lange)

  • 09:00~09:30  An algorithm to produce conditional equation for smooth signal flows in the petri net model of a signaling pathway
  •               Yoshimasa Miwa (Yamaguchi University, Japan)
  • 09:30~10:00  Gene identification and the regulation of phenylpropanoid pathways in plants
  •               Jie Luo (Huazhong Agricultural University, China)
  • 10:00~10:15  Tea break
  • 10:15~10:45  Genome-wide survey of rice microRNAs and miroRNA-target pairs in the root of a novel auxin-resistant mutant
  •              Yijun Meng (Zhejiang University, China)
  • 10:45~11:15  Using surveys of Affymetrix GeneChips to study antisense expression
  •              Sanchez Graillet, Olivia (University of Essex, UK)
  • 11:15~11:45  Developing a human transcriptome array for clinical genomics
  •               Junhee Seok (Stanford University, USA)
  • 12:00~13:30  Lunch
  • Afternoon Session (Chair: Sean May)

  • 14:00~14:30  Highlight of genomics: Discovering novel non-coding RNA genes
  •               Zhi John Lu (Yale Univeristy, USA)
  • 14:30~15:00  Evaluation of protein phosphorylation site predictors
  •              Huaqin He (Fujiang agriculture and forestry university, China)
  • 15:00~15:30  Identifying the impact of G-Quadruplexes on Affymetrix Exon Arrays using Cloud Computing
  •              Farhat N. Memon (University of Essex, UK)
  • 15:30~15:45  Tea break
  • 15:45~16:15  Centroid extensions of de novo motif detection algorithms
  •              Hendrik Mehlhorn (Leibniz Institute of Plant Genetics and Crop Plant Research, Germany)
  • 16:15~16:45  Simulation of the phase decision processes of clock gene expressions by promoter transcriptional regulations
  •              Kenji Miyamoto (Yamaguchi University, Japan)
  • 16:45~18:00  Demo/Poster
Sunday, 20th September 2009

    Morning Session: (Chair: Ralf Hofestädt)

  • 09:00~09:30  Structural bioinformatics, TCM Databases, and personalized drug design
  •              Dongqing Wei (Shanghai Jiaotong University, China)
  • 09:30~10:00  The LAILAPS search engine: Relevance ranking in life science databases
  •              Matthias Lange (Leibniz Institute of Plant Genetics and Crop Plant Research, Germany)
  • 10:00~10:15  Tea break
  • 10:15~10:45  LIMS lite: a system for management and search of primary lab data
  •              Matthias Klapperst¨¹ck (Leibniz Institute of Plant Genetics and Crop Plant Research, Germany)
  • 10:45~11:15  RiboNucleic acid tertiary structure comparison using graph theory
  •              Zain-ul-Abdin Khuhro (Univerisity of Essex, UK)
  • 11:15~11:45  Proteomics based pattern analysis in clinical practice: a robust analysis strategy
  •              Thomas Wolf (German Cancer Research Center, Germany)
  • 11:45~12:00  CIB close
  • 12:00~13:30  Lunch
  • Afternoon

  • 13:30~             Hangzhou tour (Xixi national wetland park).
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